PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016464407.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 227aa    MW: 25450.6 Da    PI: 9.643
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016464407.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.1e-055577123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H+++H
  XP_016464407.1 55 YTCSFCKREFRSAQALGGHMNVH 77
                    9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.5E-65281No hitNo description
PROSITE profilePS5015711.245582IPR007087Zinc finger, C2H2
PfamPF139121.5E-65578IPR007087Zinc finger, C2H2
SMARTSM003550.00385577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEKTSSFSSK YFKNQTIKEL NNNNNNNKVK DSWDNSYEGV DGDLIGGFLW PPRSYTCSFC  60
KREFRSAQAL GGHMNVHRRD RARLRLQSSP PKDNSTIHYS RLNLNLEPNP NPSFVSSPPS  120
SPSRKFPHFV STLPPLLSPS FSSSTSGGSE MRKWGKDGVP LNHLSQLRNG DVTKMGSAKC  180
EKVGSFLQGK ECCEVVKRSE FLRLDLGIGL LSESKEDLDL ELRLGYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-145077229superman protein
2l1o_A3e-145077229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2278441e-166GQ227844.1 Nicotiana tabacum superman (SUP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464407.11e-167PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLC7DYC31e-103C7DYC3_TOBAC; Superman
STRINGPGSC0003DMT4000444962e-68(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-25C2H2 family protein